CDS

Accession Number TCMCG057C18401
gbkey CDS
Protein Id XP_018483498.1
Location complement(join(21593510..21594241,21594326..21594565,21594645..21594749,21594821..21595372,21595444..21595896,21595980..21596567,21596643..21596852,21596934..21597089,21597166..21597318,21597410..21597496,21597565..21597665,21597781..21598003,21598076..21598240,21598324..21598413,21598486..21598914,21599001..21599071,21599146..21599380,21599429..21599586,21599668..21599796,21599902..21600247))
Gene LOC108854434
GeneID 108854434
Organism Raphanus sativus

Protein

Length 1740aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018627996.1
Definition PREDICTED: homeobox-DDT domain protein RLT2 isoform X3 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category K
Description HB1, ASXL, restriction endonuclease HTH domain
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000976        [VIEW IN EMBL-EBI]
GO:0000977        [VIEW IN EMBL-EBI]
GO:0000978        [VIEW IN EMBL-EBI]
GO:0000981        [VIEW IN EMBL-EBI]
GO:0000982        [VIEW IN EMBL-EBI]
GO:0000987        [VIEW IN EMBL-EBI]
GO:0001012        [VIEW IN EMBL-EBI]
GO:0001067        [VIEW IN EMBL-EBI]
GO:0001077        [VIEW IN EMBL-EBI]
GO:0001228        [VIEW IN EMBL-EBI]
GO:0001525        [VIEW IN EMBL-EBI]
GO:0001568        [VIEW IN EMBL-EBI]
GO:0001944        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003700        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006366        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009653        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010228        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0035239        [VIEW IN EMBL-EBI]
GO:0035295        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0044212        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0045944        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048514        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048646        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0072358        [VIEW IN EMBL-EBI]
GO:0072359        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:0140110        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1990837        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATTCTCGGTTATATTAATGATCTTGTCGATATTGCTCAATGTTTAATGTTTATGATTTTTATTTGTAAAATCCCCAATCACATTCCAAGTAGTAGTAGTAGAAACCGTAGAGAAAGAGAGAGAAAGTTTTATTTTTTTTGGTTTTGTTTTCTTTTTGAGTTGATTTTTATTCTTCTTTACTTCTTCTTCTCCTTTTCGTCAAACCAAAACAATCCAACGGTGTTTGTTCATCATCTCCTCAAAGAAAGAAAAGAACAATCCTTTTCGTTTAATCTCACATCTTCAATCACCACCAGTCTTCTCCTCCTCTTCTCAAACTTCTGTTTTGATCCTTCTGACCAAAAAATGGAAGATGTGTCTGAAGCAGACAAGAACAAAACACCAGAAGGTGGTGGTGCTGCTACTGAGAGTAAGAGTAAACGTAAAATGAAAACAGCTGCTCAGCTTGAAGTTCTTGAAAACACATACAAAGCTGAGCCGTACCCTTCGGAAGCGCTCAGAGCGGATCTCTCAGTTCAGCTGAATCTCTCCGACAGACAGCTACAGATGTGGTTCTGTCACCGCCGTCTTAAAGACAGGAAATCTTCAACTCCGACCAAACGCCAGCGTAAAGAGTCCACCACACCCTCGGCCGCTGATTTGGTGGCGGGAAATGAGCACAACTCGTTTCCTCATGAGATTGATTCCAGAAGAACCGGTGGTGGTGGTGTAACGGTGGTTAGGAGGTTTAATGAACCGTCTCCTTCTGAGGTTAGAGCCATCGGTTACGTGGAAGCTCAATTGGGAGAGCGTCTGAGAGACGACGGACCCATTCTTGGAATGGAGTTTGATCCTTTGCCTCCTGGTGCTTTTGGGACCCCTATAGAGATGCCAAGCCATCGAAAGGCAGCGACTAGGCCGGCTTATGAGACCAACTTATATGTAAAGCCTGTTAAAGATTCTGTGAGGACTATTCGTGAGTATCAGTTCCTTCCTGAGCAACCATCTTCAAGGACTGATCATTCCGAAAGAGCTTCTCCAGCGTCTCATCATCATTACGGAGTTCCACTTGATGCTTCTTCCGTGGTTATCAGGGCTTCTTCTGTATCTGGTGGACATCATCGGGATGACTATAAAAGTCCACCACAGATGATACCAAATTTAAACCTCTCAGCTCATCAAGTGAAACCAGGACACGTCTCTTCGCATCATTTGGGTGAATACGACTCGACGTACCAGAAAAGCTACGTGGATCCTGCCCTACATGGAAACGAGGATCCTTTTGTGAAATCCGAGAGAGAACTTGGTAATGATAATGATGAGGATGAGGATGGTGATGATGATGATGGTGATGATGTCCTCCTGCAACTCGAGAGAAAACGCAAGAGTGAAGAAGCAAGAATATCTCGGGAAGTGGAGGCTCATGAGAAGAGGATCCGAAAAGAGCTTGAGAGACAAGATATGCTGAGACGAAAGAGAGAAGAGCAAATAAGGAAAGAAATGGAGAGGCAAGACCGTGAAAGACGTAAAGAGGAAGAACGGCTTTTACGTGAAAGGCAGAGAGAGGAAGAGAGGTACCACAAAGAGCAGATGAAGGAGATGCAGCGAAGAGAGAAGTTCTTGAAGAAAGAAACTATCAGGGCTGAGAAGATGCGGCAAAAAGAAGAGATGCGTAGGGTGAAAGAGGTTGCAAGGCTGAAAGCTGCTAACGAGAGGGCAATGGCTCGTAAGATTGCTAAGGAATCAATGGAACTTATTGAAGACGAACGCTTAGAACTCATGGAGGTCGCTGCGTTAGCCCAAGGATTGCCTTCAATGCTCGCACTCGACTTTGAAACTCTGCAGAACCTCGATGCATATAGAGATAAGCAGGTGACGTTTCCCCCAACATCTGTAAATTTGAAAAAGCCCTTTGCTGTGAAACCATGGAATGGTTCTGATGAGAATATTGCAAATCTTCTTATGGTGTGGAGATTCTTAATCAATTTCGCTGATGTTCTTGGCCTTTGGCCATTTACTCTGGATGAGTTTACTCAAGCATTCCATGACCATGACCCACGACTCATGGGAGAGATACACATTGTTCTTTTGAAGACTATAATCAAAGATATTGAAGGAGTTGCAAGAACACTCTCAGTCGGCGTTGGAGCAAACCAAAACGCTGCAGCTAATCCCGGAGGGGGTCATCCTCATGTCGTAGAGGGTGCATATGCGTGGGGTTTTGACATACGCAGCTGGAGGAAAAACTTGAATGTTTTCACTTGGCCTGAGATCTTGAGGCAACTCGCTCTCTCTGCCGGGTTGGGACCCGAACTTAAGAAACAGGACATTAAAACCATATCTGTTCACGATGAAAACGAGGCCAACAACTCTGAGAACGTGATATTCAACTTAAGGATTGGAGCAGCAGCTGAGAATGCTTTTGCCAAGATGCAAGAAAGGGGTCTTTCTAATCCCCGACGTTCACGTCATCGTTTGACCCCAGGCACAGTTAAATTCGCTGCCTTTCATGTCCTTTCTATTGAGGGTGAAAAAGGTTTGACTATTCTCGAGGTTGCAGAGAAGATTCAGAAATCAGGATTGAGGGATCTAACTACGAGCAGGACACCTGAAGCCTCGGTTGCTGCTGCTTTGTCTCGAGATACAAAACTGTTTGAGAGGGTAGCTCCTTCTACGTACTGTGTGCGTCCTTCATATAGAAAAGACGCAGGTGATGCTGAGACTATATTCGCTGAAGCTAGGGAGAGAATACGCATGTTCAAAAGCGGTGTTACCGATGTTGATGAAGAAGCTGAGAGAGAAGAGGATTCCGAAAGCGATGTTGGAGATGATCCAGAGGTTGATTTGAACCTCAAAAAGGAAGATCCTGATGCTCTGGAGATAGGAAAGTTAACCGGTGGTGTGGAACCCTCGTTGGAAAATGGGAAGCTGGAAACCGAACCGACTACCTCTCTCCCGGAGGATACAAAAGCTGAGAAAATAGATCACATCTTACCAGACCAATCTCTAGAGGATGCAGTAGCAGACGATGGGGAACAATGGGTGCAAGGACTAGTAGAAGGAGACTATTCGAATCTCAGCATCGAGGAACGTTTAAACGCACTTGTTGCTCTGATTGGTATTGCAATAGAAGGCAACACAATCCGAATCTCCCTTGAGGAACGTTTGGAAGTTGCGAGTGCGTTAAAGAAACAAATGTGGAGTGAAGTACAACTCGACAAACGATGGAAAGAAGAGTCTTTGATCCGTGCGAATTACCTTTCGTACCCAACACCGAAGCTTGGGATTCAAGAAAGCCCATCAGCGGATGTGACACCAATCTCCTCACAGGACCCGTTGCAGTTGCAAGAGAATGTATCTGGAACGGAGACTTTGCAGTATCAGCAGCAGAGTTACACAGCGGACCGAGAAAGGCTCCGTGCAGAGTTAAAAGCGTATGTTGGATATAAAGCTGAAGAGCTATATGTATATAGGTCACTTCCGTTAGGTCAAGATCGGAGACGCAACCGTTATTGGCGGTTCTCGGCATCCGCTTCTAGGAACGATCCTGGTTGTGGTAGGATATTCGTTGAGCTTCAGGATGGTCGGTGGAGACTCATTGATTCAGAAGAGGGTTTTGACTGTTTGGTGAAGTCACTAGATGTCCGTGGTGTACGCGAATCACATCTGCATTTCATGTTGCTTAAGATCAAAGCTTCTTTTAAAGAAGCAGTGAGGAGGAATGTGGATACGGAGCTGTGTTCCATTTCTACTGGCGTAGACTTGGATTCTGATATTGCGGAGATCTCCTCAACGTTTAAGATAGAGCTAGGGGATGGTGACGGAAGCGGAGTGTTGCAACGGTTCCATAGTTTTGAGAGATGGATGTGGGATAATGTGCTTCATCCTGGTGCGTTATCCGCGTTTAAGCACGGTGCCAAGAAGAGCATTCCGCTTTTCCACATCTGCAGAAGCTGTGCGGAGTTACACTTTGCGGGGGATGTTTGCTGCCCTGGCTGTGGTCAGATGATGCCTGGTGGTTTAGATGTTAGTGAGCTGTGTTTTGCTGACCAAGTGGCTCAACTCGGCGAAATTTTGAGAAGAGACGCTGGATTTATATTGCGTGGCTCGAACCTGTCTCCTCTCAGGATAAGACTACTCAAGATTCAGTTAGCACTTGTTGAAGCTTCTCTTCCCCCTGAAGGACTTCAAACTCATTGGACAGAGAGTCTTAGAAAAACTTGGGGTCTGAAGCTGGTGTCATCAAGTTCCCCTGAAGAACTTCATCAGGTTCTGACGATGTTGGAGGTGGCGGTGAAGAGAGACTTCCTGTCTTCAAACTTTGAAACAACTTGTGAACTCTTGGACTTATCAGAAGAAGCTGTCGTCAGAGATGTTAAAGTACTACCGTGGATACCGAAGACCACGGGAGGTGTAGCTTTGAGACTATTTGAACTCGACAGCTCCATTGCTTACACACCTGATCAAAACAAGGATCCTCAAAAGGACAAAGAATCTGAAGATTTTGTCGGTTTGGAGACAAATTTTGTGAGGAATGTTCAAGAAGAACAAGACGTAATCGAGGCTACTCCGGTGCAAGTTGCATACGCTCAAGAAGACACGGAGCCTGGCTTAGTTAGAGGTCGACCACAACGAGGACGTGGCCGGCCTCGATCGCAGCGTGGTAAGAAACCATCGCAGGCTTCTGGTGGTAGACCACCACGAGGTGCATCTAACTCGAATGGCGAACCGATGCTGAGGCCGAGAGCTCAACCACGTGGGGGTAGGAAGAAGGGACGACGCAGCAGCGGGACCAGAACAAGACCGACTAAAGGAACGCTTGGTATATCCAATGAGGTAGTAGTAGTAGGACGTCGAGGTAAGGAAGTTGCCAAAACCGCTCTTCACGATTGGGTCGAAACGCCTGAAGATGAGGGGGAAGCTAGCAGCTCGGGGAGATCGTTTCATTATGATGATGATGATGTCATGGCTCCAGTTGATGACTTTGGGGAAACGAGTAAATTAGTAGGTAGAGGTGAGTTTAGCTTACATAGTGATGATGAATACGAAGAAGAAGAAGAAGACATGGACACGAAAATGAATGTTGATGATGAAGATGAAGATTACATAAACGAGGATTCTGATGGTGGTAGAGAGCAGCCGGCGGAGATGATAAGCATGGATGCGGCAGCAGCAGCTCGGAGAAGGTTTCCGTTTGAAGATCCTGATCTTACATCTTCATCTTCCTCTGATTTTCAGTGA
Protein:  
MILGYINDLVDIAQCLMFMIFICKIPNHIPSSSSRNRRERERKFYFFWFCFLFELIFILLYFFFSFSSNQNNPTVFVHHLLKERKEQSFSFNLTSSITTSLLLLFSNFCFDPSDQKMEDVSEADKNKTPEGGGAATESKSKRKMKTAAQLEVLENTYKAEPYPSEALRADLSVQLNLSDRQLQMWFCHRRLKDRKSSTPTKRQRKESTTPSAADLVAGNEHNSFPHEIDSRRTGGGGVTVVRRFNEPSPSEVRAIGYVEAQLGERLRDDGPILGMEFDPLPPGAFGTPIEMPSHRKAATRPAYETNLYVKPVKDSVRTIREYQFLPEQPSSRTDHSERASPASHHHYGVPLDASSVVIRASSVSGGHHRDDYKSPPQMIPNLNLSAHQVKPGHVSSHHLGEYDSTYQKSYVDPALHGNEDPFVKSERELGNDNDEDEDGDDDDGDDVLLQLERKRKSEEARISREVEAHEKRIRKELERQDMLRRKREEQIRKEMERQDRERRKEEERLLRERQREEERYHKEQMKEMQRREKFLKKETIRAEKMRQKEEMRRVKEVARLKAANERAMARKIAKESMELIEDERLELMEVAALAQGLPSMLALDFETLQNLDAYRDKQVTFPPTSVNLKKPFAVKPWNGSDENIANLLMVWRFLINFADVLGLWPFTLDEFTQAFHDHDPRLMGEIHIVLLKTIIKDIEGVARTLSVGVGANQNAAANPGGGHPHVVEGAYAWGFDIRSWRKNLNVFTWPEILRQLALSAGLGPELKKQDIKTISVHDENEANNSENVIFNLRIGAAAENAFAKMQERGLSNPRRSRHRLTPGTVKFAAFHVLSIEGEKGLTILEVAEKIQKSGLRDLTTSRTPEASVAAALSRDTKLFERVAPSTYCVRPSYRKDAGDAETIFAEARERIRMFKSGVTDVDEEAEREEDSESDVGDDPEVDLNLKKEDPDALEIGKLTGGVEPSLENGKLETEPTTSLPEDTKAEKIDHILPDQSLEDAVADDGEQWVQGLVEGDYSNLSIEERLNALVALIGIAIEGNTIRISLEERLEVASALKKQMWSEVQLDKRWKEESLIRANYLSYPTPKLGIQESPSADVTPISSQDPLQLQENVSGTETLQYQQQSYTADRERLRAELKAYVGYKAEELYVYRSLPLGQDRRRNRYWRFSASASRNDPGCGRIFVELQDGRWRLIDSEEGFDCLVKSLDVRGVRESHLHFMLLKIKASFKEAVRRNVDTELCSISTGVDLDSDIAEISSTFKIELGDGDGSGVLQRFHSFERWMWDNVLHPGALSAFKHGAKKSIPLFHICRSCAELHFAGDVCCPGCGQMMPGGLDVSELCFADQVAQLGEILRRDAGFILRGSNLSPLRIRLLKIQLALVEASLPPEGLQTHWTESLRKTWGLKLVSSSSPEELHQVLTMLEVAVKRDFLSSNFETTCELLDLSEEAVVRDVKVLPWIPKTTGGVALRLFELDSSIAYTPDQNKDPQKDKESEDFVGLETNFVRNVQEEQDVIEATPVQVAYAQEDTEPGLVRGRPQRGRGRPRSQRGKKPSQASGGRPPRGASNSNGEPMLRPRAQPRGGRKKGRRSSGTRTRPTKGTLGISNEVVVVGRRGKEVAKTALHDWVETPEDEGEASSSGRSFHYDDDDVMAPVDDFGETSKLVGRGEFSLHSDDEYEEEEEDMDTKMNVDDEDEDYINEDSDGGREQPAEMISMDAAAAARRRFPFEDPDLTSSSSSDFQ